See our current publications on Google Scholar or PubMed.

 

 

Peer-reviewed journal articles:

 

  1. Lau D, Lan LY, Andrews SF, Huang M, Huang Y, DeKosky BJ, Rojas KT, Henry C, Neu KE, Palm EI, Ippolito GC, Georgiou G, Wilson PC, “Low CD21 expression defines a population of recent germinal center graduates primed for plasma cell differentiation” Science Immunology, 2(7):eaai8153, 2017. DOI: 10.1126/sciimmunol.aai8153
  1. Peter D. Kwong, Gwo-Yu Chuang, Brandon J. DeKosky, Tatyana Gindin, Ivelin S. Georgiev, Thomas Lemmin, Chaim A. Schramm, Zizhang Sheng, Cinque Soto, An-Suei Yang, Lawrence Shapiro, “Antibodyomics: Bioinformatics Technologies for Understanding B Cell Immunity to HIV-1” Immunological Reviews, 275(1):108-128, 2017. PMID: 28133812, DOI: 10.1111/imr.12480

 

Books:

 

DeKosky BJ, Decoding the Antibody Repertoire: High Throughput Sequencing of Multiple Transcripts from Single B Cells (Springer International Publishing, ISBN 978-3-319-58517-8, In press, 2017)

 

 

 

Dr. DeKosky's pre-2017 publications:

 

  1. Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee C-H, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, Druz A, Zhang B, Zhang Y, Wang L, Kong W-P, Park D, Popova LI, Dekker CL, Davis MM, Carter CE, Ross TM, Ellington AD, Wilson PC, Marcotte EM, Mascola JR, Ippolito GC, Krammer F, Quake SR, Kwong PD, Georgiou G, “Quantitative, molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination”, Nature Medicine, 22(12):1456-1464, 2016. PMID: 27820605, DOI: 10.1038/nm.4224
  1. Ming Tian, Cheng Cheng, Xuejun Chen, Hongying Duan, Hwei-Ling Cheng, Mai Dao, Zizhang Sheng, Michael Kimble, Lingshu Wang , Sherry Lin, Stephen D. Schmidt, Zhou Du, M. Gordon Joyce, Yiwei Chen, Brandon J. DeKosky, Yimin Chen, Erica Normandin, Elizabeth Cantor, Rita Chen, Nicole A Doria-Rose, Yi Zhang, Wei Shi, Wing-Pui Kong, Misook Choe, Amy R. Henry, Farida Laboune, Ivelin S. Georgiev, Pei-Yi Huang, Suvi Jain, Andrew T. McGuire, Eric Georgeson, Sergey Menis, Daniel C. Douek, William R. Schief, Leonidas Stamatatos, Peter D. Kwong, Lawrence Shapiro, Barton F. Haynes, John R. Mascola, and Frederick W. Alt, “Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires,” Cell, 166(6):1471-1484.e18, 2016. PMID: 27610571, PMCID: PMC5103708 [Available on 2017-09-08], DOI: 10.1016/j.cell.2016.07.029
  1. DeKosky BJ*, Lungu OI*, Park D, Johnson EL, Charab W, Chrysostomou C, Kuroda D, Ippolito GC, Ellington AD, Gray J, Georgiou G, “Large-Scale Sequence and Structural Comparisons of Human Naïve and Antigen-Experienced Antibody Repertoires,” Proceedings of the National Academy of Sciences, USA, 113(19):E2636-45, 2016. PMID: 27114511, PMCID: PMC4868480, DOI: 10.1073/pnas.1525510113
  1. Gorman J, Soto C, Yang MM, Davenport TM, Guttman M, Bailer RT, Chuang G, DeKosky BJ, Doria-Rose NA, Druz A, Ernandes MG, Georgiev IS, Jarosinski MC, Joyce MG, Lemmin TM, Leung S, Louder MK, McDaniels J, Narpala S, Pancera M, Stuckey J, Wu X, Yang Y, Zhang B, Zhou T, NISC Comparative Sequencing Program, Mullikin JC, Baxa U, Georgiou G, McDermott AB, Bonsignori M, Haynes BF, Moore PL, Morris L, Lee KK, Shapiro L, Mascola JR, Kwong PD, “HIV-1-Env structures with V1V2-directed broadly neutralizing antibodies reveal commonalities that enable ontogeny-specific vaccine design,” Nature Structural & Molecular Biology, 23:81–90, 2016. PMID: 26689967, PMCID: PMC4833398, DOI: 10.1038/nsmb.314
  1. McDaniel JR*, DeKosky BJ*, Tanno H, Ellington AD, Georgiou G, "Ultra-high throughput sequencing of the immune receptor repertoire from millions of lymphocytes," Nature Protocols, 11:429–442, 2016. PMID: 26844430, DOI: 10.1038/nprot.2016.024
  1. Murzabaev M, Kojima T, Mizoguchi T, Kobayashi I, DeKosky BJ, Georgiou G, Nakano H, “Handmade microfluidic device for biochemical applications in emulsion,” Journal of Bioscience and Bioengineering, 121(4):471-6, 2016. PMID: 26386750, DOI: 10.1016/j.jbiosc.2015.08.001
  1. Wang B*, Kluwe CA*, Lungu OI*, DeKosky BJ, Kerr SA, Johnson EJ, Jung J, Reizigh AB, Carroll SM, Reyes A, Bentz JR, Villanueva I, Altman AL, Davey R, Ellington AD, Georgiou G, "Facile discovery of a diverse panel of anti-ebola virus antibodies by immune repertoire mining," Scientific Reports, 5:13926, 2015. PMID: 26355042, PMCID: PMC4564727, DOI: 10.1038/srep13926
  1. DeKosky BJ, Kojima T, Rodin A, Charab W, Ippolito GC, Ellington AD, Georgiou G, “In-depth determination and analysis of the human paired heavy and light chain antibody repertoire,” Nature Medicine, 21(1): 86-91, 2015. PMID: 25501908, DOI: 10.1038/nm.3743
    1. Featured in Nature Technology Review http://www.nature.com/nature/journal/v525/n7569/full/525409a.html
  1. Lavinder JJ, Wine Y, Giesecke C, Ippolito GC, Horton AP, Lungu OI, Hoi KH, DeKosky BJ, Murrin EM, Wirth MM, Ellington AD, Dörner T, Marcotte EM, Boutz DR, Georgiou G “Identification and characterization of the constituent human serum antibodies elicited by vaccination,” Proceedings of the National Academy of Sciences, 111(6): 2259–2264, 2014. PMID: 24469811, PMCID: PMC3926051, DOI: 10.1073/pnas.1317793111
  1. Doria-Rose NA*, Schramm CA*, Gorman J*, Moore PL*, Bhiman JN, DeKosky BJ, Ernandes MJ, Georgiev IS, Kim HJ, Pancera M, Staupe RP, Altae-Tran HR, Bailer RT, Crooks ET, Cupo A, Druz A, Garrett NJ, Hoi KH, Kong R, Louder MK, Longo NS, McKee K, Nonyane M, O’Dell S, Roark RS, Rudicell RS, Schmidt SD, Sheward DJ, Soto C, Wibmer CK, Yang Y, Zhang Z, NISC Comparative Sequencing, Mullikin JC, Binley JM, Sanders RW, Wilson IA, Moore JP, Ward AB, Georgiou G, Williamson C, Abdool Karim SS, Morris L**, Kwong PD**, Shapiro L**, Mascola JR** “Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies,” Nature, 509(7498): 55–62, 2014. PMID: 24590074, PMCID: PMC4395007, DOI: 10.1038/nature13036
    1. MedicalXpress: http://medicalxpress.com/news/2014-03-antibody-evolution-hiv-vaccine.html
    2. Science Newsline: http://www.sciencenewsline.com/articles/2014030414220027.html
    3. Medical News Today: http://www.medicalnewstoday.com/releases/273504.php
    4. F1000 selected as a “Recommended” paper: http://f1000.com/prime/71829789
  1. DeKosky BJ, Ippolito GC, Deschner RP, Lavinder JJ, Wine Y, Rawlings BM, Varadarajan N, Giesecke C, Dörner T, Andrews SF, Wilson PC, Hunicke-Smith SP, Willson CG, Ellington AD, Georgiou G, “High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire,” Nature Biotechnology, 31(2): 166-169, 2013. PMID: 23334449, PMCID: PMC3910347, DOI: 10.1038/nbt.2492
    1. Featured in The Scientist http://www.the-scientist.com/?articles.view/articleNo/39777/title/Accelerating-Antibody-Discovery/
  1. DeKosky BJ, Dormer NH, Ingavle GC, Roatch CH, Lomakin J, Detamore MS, Gehrke SH, “Hierarchically designed agarose and poly(ethylene glycol) interpenetrating network hydrogels for cartilage tissue engineering,” Tissue Engineering Part C: Methods, 16(6): 1533-1542, 2010. PMID: 20626274, PMCID: PMC2988644, DOI: 10.1089/ten.tec.2009.0761
    1. 12th most recently-cited article in TEC, Dec 2014